PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676792476
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family HSF
Protein Properties Length: 154aa    MW: 18149.9 Da    PI: 9.6013
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676792476genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind51.92e-16201056101
                   HHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXX CS
  HSF_DNA-bind   6 lyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkk 101
                   lyei++ ++++ +isws+ng+sf+v+dee f ++   + F +++f+ F   L++ gFkkv++e+          e++h++F +gk el +++ +++
     676792476  20 LYEIVDRPSTDPIISWSQNGKSFIVWDEEAFCRNF-IHKFHQTKFHFFAYRLKVAGFKKVDSEH---------LEYAHDEFVRGKPELADEMDKRR 105
                   8********************************55.56799********************999.........78*************99998876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004153.8E-1411104IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.106.0E-191997IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004479.1E-1620103IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.55E-1620102IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MVRLHGEHGS KARHYLAGIL YEIVDRPSTD PIISWSQNGK SFIVWDEEAF CRNFIHKFHQ  60
TKFHFFAYRL KVAGFKKVDS EHLEYAHDEF VRGKPELADE MDKRRMEFYD AKLKTFMATA  120
PTPPAELRKA FKLAMMEKRE REKAVAKDIT QLNL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009130314.11e-26PREDICTED: heat stress transcription factor B-2b-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96528111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18870.17e-25HSF family protein